MS BLAST Search
(
disclaimer
)
at EMBL
Tips/Help
For details & citation:
Shevchenko, A. et. al.: Charting the proteomes...; Anal Chem. 2001 May 1;73(9):1917-26.
Choose a database for your search and set the number of unique peptides and score table:
Database
nrdb95
sp_nrdb
nrdb
swissprot
hs_swiss
pdb
ensemble pep
unique peptides
1
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9
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30
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50
score table
100
99
Enter here your sequence in
FASTA
or raw format:
Options
for the BLAST server:
Matrix
PAM30MS
BLOSUM62
Filter
default
none
SEG
SEG+XNU
XNU
Echofilter
Expect
100
Cutoff
default
50
55
60
65
70
75
80
85
90
95
100
105
110
115
120
Strand
both
top
bottom
Descriptions
0
1
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15
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40
50
100
250
500
Alignments
0
1
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Histogram
Other advanced options:
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Yan P. Yuan
Last modified at 28.Oct.2003 (1st ver. 30.Mar.2001; 19.Jun.2002)